PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014757
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 247aa    MW: 26497.6 Da    PI: 7.4137
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014757genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.51e-38221221100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa+dC++apyf++eq p +fa+vhk+FGasnv+kll +lp  +r +a+ ++++eA+ar+rdPv+G+v++i++lq+q++ l+a+l++l
  Lus10014757  22 PCGACKFLRRKCAADCIFAPYFCSEQgPTRFAAVHKVFGASNVSKLLLHLPAADRCEAVVTITFEAQARLRDPVHGCVSHIFSLQHQVAYLQAQLVQL 119
                  7*************************99********************************************************************99 PP

       DUF260  98 kee 100
                  k++
  Lus10014757 120 KSQ 122
                  987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.13121123IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-3722120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MASYSGNSTT TTSSSGGGTG SPCGACKFLR RKCAADCIFA PYFCSEQGPT RFAAVHKVFG  60
ASNVSKLLLH LPAADRCEAV VTITFEAQAR LRDPVHGCVS HIFSLQHQVA YLQAQLVQLK  120
SQMAAQNGSN DTNTAPLIGC REANYSHPTP YDNSYSFNPP PQQTAVSSPE GSPESVEYGG  180
GSSVTPAGHL LQQMMIRCRE EASMLEQQNY SSSSYGQWTS SKKRPYDSVE LGDLQALALR  240
MMGTYN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521022.11e-76PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB73e-67LBD16_ARATH; LOB domain-containing protein 16
TrEMBLB9S4L61e-76B9S4L6_RICCO; LOB domain-containing protein, putative
STRINGPGSC0003DMT4000251358e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-50lateral organ boundaries-domain 16